Hyper Stacks 1994 May

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MacBinary | 1992-07-31 | 131.4 KB | [STAK/WILD]
open in:
MacOS 8.1 extracted |
Win98 extracted |
DOS extracted
view JSON data |
view as text

This file was processed as: MacBinary (archive/macBinary).

You can browse this item here: Oligos
Confidence	Program	Detection	Match Type	Support
`100%`	dexvert	HyperCard Stack `(archive/hypercard)`	idMeta	Supported
`10%`	dexvert	MacBinary `(archive/macBinary)`	fallback	Supported
`10%`	dexvert	Jesper Olsen Module `(music/jesperOlsen)`	magic	Supported
`100%`	file	MacBinary II, inited, Mon Apr 2 09:30:50 1990, modified Fri Jul 31 06:07:46 1992, creator HyperCard, type HyperCard stack, 122880 bytes "Oligos" , at 0x1e080 11504 bytes resource	default (weak)
`99%`	file	data	default
`49%`	TrID	Mac HyperCard stack (MacBinary)	default
`33%`	TrID	TTComp archive compressed (bin-4K)	default (weak)
`16%`	TrID	MacBinary 2	default (weak)
`100%`	lsar	MacBinary	default
id metadata
key	value
macFileType	`[STAK]`
macFileCreator	`[WILD]`
hex view
+--------+-------------------------+-------------------------+--------+--------+
|00000000| 00 06 4f 6c 69 67 6f 73 | 00 00 00 00 00 00 00 00 |..Oligos|........|
|00000010| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000020| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000030| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000040| 00 53 54 41 4b 57 49 4c | 44 01 00 00 00 00 00 00 |.STAKWIL|D.......|
|00000050| 00 00 00 00 01 e0 00 00 | 00 2c f0 a2 3d 04 8a a6 |........|.,..=...|
|00000060| 9e c1 72 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |..r.....|........|
|00000070| 00 00 00 00 00 00 00 00 | 00 00 81 81 c8 1d 00 00 |........|........|
|00000080| 00 00 68 00 53 54 41 4b | ff ff ff ff 00 00 00 00 |..h.STAK|........|
|00000090| 00 00 00 0a 00 01 e0 00 | 00 00 68 00 00 00 00 00 |........|..h.....|
|000000a0| 00 00 00 01 00 00 00 02 | 00 00 12 b1 00 00 00 05 |........|........|
|000000b0| 00 00 16 8a 00 00 0c 42 | 00 00 00 02 00 00 09 20 |.......B|....... |
|000000c0| 00 00 0d 2f 00 00 00 00 | 00 05 00 00 18 00 00 00 |.../....|........|
|000000d0| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|000000e0| 01 20 80 00 02 10 80 00 | 02 10 80 00 02 10 80 00 |. ......|........|
|000000f0| ea 74 b9 44 00 00 00 00 | 00 45 00 40 01 9b 02 40 |.t.D....|.E.@...@|
|00000100| 00 00 00 00 01 e0 02 80 | 00 00 00 00 00 00 00 00 |........|........|
|00000110| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000120| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000130| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000140| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000150| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000160| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000170| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000180| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000190| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|000001a0| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|000001b0| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|000001c0| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|000001d0| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|000001e0| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|000001f0| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000200| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000210| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000220| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000230| 00 00 60 22 00 00 5d 40 | 00 00 00 00 00 00 00 00 |..`"..]@|........|
|00000240| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000250| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000260| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000270| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000280| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000290| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|000002a0| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|000002b0| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|000002c0| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|000002d0| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|000002e0| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|000002f0| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000300| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000310| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000320| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000330| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000340| 00 00 00 00 00 00 00 00 | 00 00 22 00 00 00 22 00 |........|.."...".|
|00000350| 88 00 22 00 88 00 22 00 | cc 00 33 00 cc 00 33 00 |.."...".|..3...3.|
|00000360| cc 88 33 22 cc 88 33 22 | ee 88 bb 22 ee 88 bb 22 |..3"..3"|..."..."|
|00000370| ee cc bb 33 ee cc bb 33 | ff cc ff 33 ff cc ff 33 |...3...3|...3...3|
|00000380| ff ee ff bb ff ee ff bb | ff ff ff bb ff ff ff bb |........|........|
|00000390| 80 10 02 20 01 08 40 04 | ff ff ff ff ff ff ff ff |... ..@.|........|
|000003a0| 88 22 88 22 88 22 88 22 | 11 22 44 88 11 22 44 88 |."."."."|."D.."D.|
|000003b0| c4 80 0c 68 43 02 30 26 | b1 30 03 1b d8 c0 0c 8d |...hC.0&|.0......|
|000003c0| aa 00 aa 00 aa 00 aa 00 | 88 22 55 22 88 22 55 22 |........|."U"."U"|
|000003d0| 88 55 22 55 88 55 22 55 | 77 dd 77 dd 77 dd 77 dd |.U"U.U"U|w.w.w.w.|
|000003e0| 80 00 00 00 00 00 00 00 | aa 55 aa 55 aa 55 aa 55 |........|.U.U.U.U|
|000003f0| 03 84 48 30 0c 02 01 01 | 82 44 39 44 82 01 01 01 |..H0....|.D9D....|
|00000400| 88 14 22 41 88 41 22 14 | 80 80 41 3e 08 08 14 e3 |.."A.A".|..A>....|
|00000410| 22 04 8c 74 22 17 98 10 | be 80 88 08 eb 08 88 80 |"..t"...|........|
|00000420| 25 c8 32 89 64 24 4c 92 | a2 9c 41 be 2a c9 14 eb |%.2.d$L.|..A.*...|
|00000430| 40 a0 00 00 04 0a 00 00 | 80 40 20 00 02 04 08 00 |@.......|.@ .....|
|00000440| aa 00 80 00 88 00 80 00 | ff 80 80 80 80 80 80 80 |........|........|
|00000450| 08 1c 22 c1 80 01 02 04 | ff 80 80 80 ff 08 08 08 |..".....|........|
|00000460| f8 74 22 47 8f 17 22 71 | bf 00 bf bf b0 b0 b0 b0 |.t"G.."q|........|
|00000470| ff 7f be 5d a2 41 80 00 | fa f5 fa f5 a0 50 a0 50 |...].A..|.....P.P|
|00000480| 00 00 e5 a0 00 00 06 a0 | 00 01 dd 60 00 00 02 80 |........|...`....|
|00000490| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|000004a0| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|000004b0| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|000004c0| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|000004d0| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|000004e0| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|000004f0| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000500| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000510| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000520| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000530| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000540| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000550| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000560| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000570| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000580| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000590| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|000005a0| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|000005b0| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|000005c0| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|000005d0| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|000005e0| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|000005f0| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000600| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000610| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000620| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000630| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000640| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000650| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000660| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000670| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000680| b0 b0 b0 b0 b0 b0 b0 b0 | b0 b0 b0 b0 b0 b0 b0 b0 |........|........|
|00000690| b0 b0 b0 b0 b0 b0 b0 b0 | b0 b0 b0 b0 b0 b0 b0 b0 |........|........|
|000006a0| b0 b0 b0 b0 b0 b0 b0 b0 | b0 b0 b0 b0 b0 b0 b0 b0 |........|........|
|000006b0| b0 b0 b0 b0 b0 b0 b0 b0 | b0 b0 b0 b0 b0 b0 b0 b0 |........|........|
|000006c0| b0 b0 b0 b0 b0 b0 b0 0d | 4f 4c 49 47 4f 53 20 73 |........|OLIGOS s|
|000006d0| 74 61 63 6b 0d b0 b0 b0 | b0 b0 b0 b0 b0 b0 b0 b0 |tack....|........|
|000006e0| b0 b0 b0 b0 b0 b0 b0 b0 | b0 b0 b0 b0 b0 b0 b0 b0 |........|........|
|000006f0| b0 b0 b0 b0 b0 b0 b0 b0 | b0 b0 b0 b0 b0 b0 b0 b0 |........|........|
|00000700| b0 b0 b0 b0 b0 b0 b0 b0 | b0 b0 b0 b0 b0 b0 b0 b0 |........|........|
|00000710| b0 b0 b0 b0 b0 b0 b0 b0 | b0 b0 b0 b0 0d 6f 6e 20 |........|.....on |
|00000720| 69 64 6c 65 0d 67 6c 6f | 62 61 6c 20 74 69 6d 65 |idle.glo|bal time|
|00000730| 4f 75 74 53 74 61 74 75 | 73 2c 74 69 6d 65 4f 75 |OutStatu|s,timeOu|
|00000740| 74 2c 73 63 72 65 65 6e | 53 61 76 65 72 2c 6f 6c |t,screen|Saver,ol|
|00000750| 64 54 69 6d 65 0d 61 64 | 64 20 31 20 74 6f 20 74 |dTime.ad|d 1 to t|
|00000760| 69 6d 65 6f 75 74 0d 69 | 66 20 74 69 6d 65 6f 75 |imeout.i|f timeou|
|00000770| 74 3e 36 30 30 30 20 74 | 68 65 6e 20 70 75 74 20 |t>6000 t|hen put |
|00000780| 65 6d 70 74 79 20 69 6e | 74 6f 20 74 69 6d 65 6f |empty in|to timeo|
|00000790| 75 74 0d 65 6c 73 65 20 | 69 66 20 74 69 6d 65 6f |ut.else |if timeo|
|000007a0| 75 74 3d 36 30 30 30 20 | 74 68 65 6e 0d 69 66 20 |ut=6000 |then.if |
|000007b0| 74 69 6d 65 4f 75 74 53 | 74 61 74 75 73 3d 74 72 |timeOutS|tatus=tr|
|000007c0| 75 65 20 74 68 65 6e 0d | 70 75 74 20 65 6d 70 74 |ue then.|put empt|
|000007d0| 79 20 69 6e 74 6f 20 74 | 69 6d 65 6f 75 74 0d 76 |y into t|imeout.v|
|000007e0| 69 73 75 61 6c 20 65 66 | 66 65 63 74 20 69 72 69 |isual ef|fect iri|
|000007f0| 73 20 63 6c 6f 73 65 0d | 67 6f 20 68 6f 6d 65 0d |s close.|go home.|
|00000800| 65 6e 64 20 69 66 0d 69 | 66 20 73 63 72 65 65 6e |end if.i|f screen|
|00000810| 53 61 76 65 72 20 69 73 | 20 74 72 75 65 20 74 68 |Saver is| true th|
|00000820| 65 6e 0d 68 69 64 65 20 | 6d 65 6e 75 62 61 72 0d |en.hide |menubar.|
|00000830| 70 75 74 20 22 2c 22 26 | 69 74 65 6d 20 33 20 6f |put ","&|item 3 o|
|00000840| 66 20 74 68 65 20 73 63 | 72 65 65 6e 72 65 63 74 |f the sc|reenrect|
|00000850| 26 22 2c 22 26 69 74 65 | 6d 20 34 20 6f 66 20 74 |&","&ite|m 4 of t|
|00000860| 68 65 20 73 63 72 65 65 | 6e 72 65 63 74 20 69 6e |he scree|nrect in|
|00000870| 74 6f 20 63 6f 4f 72 64 | 73 0d 70 75 74 20 22 2d |to coOrd|s.put "-|
|00000880| 22 26 28 69 74 65 6d 20 | 33 20 6f 66 20 74 68 65 |"&(item |3 of the|
|00000890| 20 73 63 72 65 65 6e 72 | 65 63 74 29 2f 31 2e 35 | screenr|ect)/1.5|
|000008a0| 26 22 2c 2d 22 26 28 69 | 74 65 6d 20 34 20 6f 66 |&",-"&(i|tem 4 of|
|000008b0| 20 74 68 65 20 73 63 72 | 65 65 6e 72 65 63 74 29 | the scr|eenrect)|
|000008c0| 2f 31 2e 35 20 62 65 66 | 6f 72 65 20 63 6f 4f 72 |/1.5 bef|ore coOr|
|000008d0| 64 73 0d 73 63 72 65 65 | 6e 73 61 76 65 72 20 63 |ds.scree|nsaver c|
|000008e0| 6f 4f 72 64 73 0d 73 68 | 6f 77 20 6d 65 6e 75 62 |oOrds.sh|ow menub|
|000008f0| 61 72 0d 65 6e 64 20 69 | 66 0d 65 6e 64 20 69 66 |ar.end i|f.end if|
|00000900| 0d 69 66 20 74 68 65 20 | 74 69 63 6b 73 2d 6f 6c |.if the |ticks-ol|
|00000910| 64 74 69 6d 65 3e 32 30 | 20 74 68 65 6e 20 70 75 |dtime>20| then pu|
|00000920| 74 20 30 20 69 6e 74 6f | 20 74 69 6d 65 6f 75 74 |t 0 into| timeout|
|00000930| 0d 70 75 74 20 74 68 65 | 20 74 69 63 6b 73 20 69 |.put the| ticks i|
|00000940| 6e 74 6f 20 6f 6c 64 74 | 69 6d 65 0d 65 6e 64 20 |nto oldt|ime.end |
|00000950| 69 64 6c 65 0d 0d 6f 6e | 20 6d 6f 75 73 65 64 6f |idle..on| mousedo|
|00000960| 77 6e 0d 67 6c 6f 62 61 | 6c 20 74 69 6d 65 6f 75 |wn.globa|l timeou|
|00000970| 74 0d 70 75 74 20 65 6d | 70 74 79 20 69 6e 74 6f |t.put em|pty into|
|00000980| 20 74 69 6d 65 6f 75 74 | 0d 70 61 73 73 20 6d 6f | timeout|.pass mo|
|00000990| 75 73 65 64 6f 77 6e 0d | 65 6e 64 20 6d 6f 75 73 |usedown.|end mous|
|000009a0| 65 64 6f 77 6e 0d 0d 6f | 6e 20 6f 70 65 6e 63 61 |edown..o|n openca|
|000009b0| 72 64 0d 67 6c 6f 62 61 | 6c 20 6f 6c 64 6e 61 6d |rd.globa|l oldnam|
|000009c0| 65 0d 69 66 20 74 68 65 | 20 73 68 6f 72 74 20 6e |e.if the| short n|
|000009d0| 61 6d 65 20 6f 66 20 74 | 68 69 73 20 63 64 20 69 |ame of t|his cd i|
|000009e0| 73 20 69 6e 20 63 64 20 | 66 6c 64 20 22 6f 6c 69 |s in cd |fld "oli|
|000009f0| 67 6f 69 6e 64 65 78 22 | 20 6f 66 20 63 64 20 31 |goindex"| of cd 1|
|00000a00| 20 74 68 65 6e 0d 70 75 | 74 20 74 68 65 20 73 68 | then.pu|t the sh|
|00000a10| 6f 72 74 20 6e 61 6d 65 | 20 6f 66 20 74 68 69 73 |ort name| of this|
|00000a20| 20 63 64 20 69 6e 74 6f | 20 6f 6c 64 6e 61 6d 65 | cd into| oldname|
|00000a30| 0d 69 66 20 74 68 65 20 | 6c 6f 63 6b 74 65 78 74 |.if the |locktext|
|00000a40| 20 6f 66 20 62 67 20 66 | 6c 64 20 22 64 61 74 61 | of bg f|ld "data|
|00000a50| 22 20 69 73 20 74 72 75 | 65 20 74 68 65 6e 0d 73 |" is tru|e then.s|
|00000a60| 65 74 20 6c 6f 63 6b 74 | 65 78 74 20 6f 66 20 62 |et lockt|ext of b|
|00000a70| 67 20 66 6c 64 20 22 64 | 61 74 61 22 20 74 6f 20 |g fld "d|ata" to |
|00000a80| 66 61 6c 73 65 0d 65 6e | 64 20 69 66 0d 65 6c 73 |false.en|d if.els|
|00000a90| 65 20 73 65 74 20 74 68 | 65 20 6c 6f 63 6b 74 65 |e set th|e lockte|
|00000aa0| 78 74 20 6f 66 20 62 67 | 20 66 6c 64 20 31 20 74 |xt of bg| fld 1 t|
|00000ab0| 6f 20 74 72 75 65 0d 65 | 6e 64 20 6f 70 65 6e 63 |o true.e|nd openc|
|00000ac0| 61 72 64 0d 0d 6f 6e 20 | 63 6c 6f 73 65 63 61 72 |ard..on |closecar|
|00000ad0| 64 0d 69 66 20 74 68 65 | 20 73 68 6f 72 74 20 6e |d.if the| short n|
|00000ae0| 61 6d 65 20 6f 66 20 74 | 68 69 73 20 63 64 20 69 |ame of t|his cd i|
|00000af0| 73 20 69 6e 20 63 64 20 | 66 6c 64 20 22 6f 6c 69 |s in cd |fld "oli|
|00000b00| 67 6f 69 6e 64 65 78 22 | 20 6f 66 20 63 64 20 31 |goindex"| of cd 1|
|00000b10| 20 74 68 65 6e 0d 69 66 | 20 74 68 65 20 76 69 73 | then.if| the vis|
|00000b20| 69 62 6c 65 20 6f 66 20 | 62 67 20 66 6c 64 20 22 |ible of |bg fld "|
|00000b30| 73 74 6f 72 61 67 65 22 | 20 69 73 20 74 72 75 65 |storage"| is true|
|00000b40| 20 74 68 65 6e 20 68 69 | 64 65 20 62 67 20 66 6c | then hi|de bg fl|
|00000b50| 64 20 22 73 74 6f 72 61 | 67 65 22 0d 65 6e 64 20 |d "stora|ge".end |
|00000b60| 69 66 0d 65 6e 64 20 63 | 6c 6f 73 65 63 61 72 64 |if.end c|losecard|
|00000b70| 0d 0d 6f 6e 20 63 68 61 | 6e 67 65 6e 61 6d 65 0d |..on cha|ngename.|
|00000b80| 70 75 74 20 74 68 65 20 | 73 68 6f 72 74 20 6e 61 |put the |short na|
|00000b90| 6d 65 20 6f 66 20 74 68 | 69 73 20 63 64 20 69 6e |me of th|is cd in|
|00000ba0| 74 6f 20 6c 6f 63 61 6c | 6f 6c 64 6e 61 6d 65 0d |to local|oldname.|
|00000bb0| 70 75 74 20 63 64 20 66 | 6c 64 20 22 6f 6c 69 67 |put cd f|ld "olig|
|00000bc0| 6f 69 6e 64 65 78 22 20 | 6f 66 20 63 64 20 31 20 |oindex" |of cd 1 |
|00000bd0| 69 6e 74 6f 20 6f 6c 69 | 67 6f 69 6e 64 65 78 0d |into oli|goindex.|
|00000be0| 69 66 20 74 68 65 20 73 | 68 6f 72 74 20 6e 61 6d |if the s|hort nam|
|00000bf0| 65 20 6f 66 20 74 68 69 | 73 20 63 64 20 69 73 20 |e of thi|s cd is |
|00000c00| 6e 6f 74 20 69 6e 20 6f | 6c 69 67 6f 69 6e 64 65 |not in o|ligoinde|
|00000c10| 78 20 74 68 65 6e 20 65 | 78 69 74 20 74 6f 20 48 |x then e|xit to H|
|00000c20| 79 70 65 72 63 61 72 64 | 0d 65 6c 73 65 20 69 66 |ypercard|.else if|
|00000c30| 20 6c 69 6e 65 20 31 20 | 6f 66 20 62 67 20 66 6c | line 1 |of bg fl|
|00000c40| 64 20 69 64 20 31 32 20 | 69 73 20 65 6d 70 74 79 |d id 12 |is empty|
|00000c50| 20 74 68 65 6e 20 70 75 | 74 20 6c 6f 63 61 6c 6f | then pu|t localo|
|00000c60| 6c 64 6e 61 6d 65 20 69 | 6e 74 6f 20 6c 69 6e 65 |ldname i|nto line|
|00000c70| 20 31 20 6f 66 20 62 67 | 20 66 6c 64 20 69 64 20 | 1 of bg| fld id |
|00000c80| 31 32 0d 65 6c 73 65 0d | 70 75 74 20 30 20 69 6e |12.else.|put 0 in|
|00000c90| 74 6f 20 61 73 63 69 69 | 6f 6c 64 0d 70 75 74 20 |to ascii|old.put |
|00000ca0| 30 20 69 6e 74 6f 20 61 | 73 63 69 69 6e 65 77 0d |0 into a|sciinew.|
|00000cb0| 70 75 74 20 74 68 65 20 | 6e 75 6d 62 65 72 20 6f |put the |number o|
|00000cc0| 66 20 6c 69 6e 65 73 20 | 6f 66 20 6f 6c 69 67 6f |f lines |of oligo|
|00000cd0| 69 6e 64 65 78 20 69 6e | 74 6f 20 6c 69 6e 65 73 |index in|to lines|
|00000ce0| 0d 70 75 74 20 6c 69 6e | 65 20 31 20 6f 66 20 62 |.put lin|e 1 of b|
|00000cf0| 67 20 66 6c 64 20 69 64 | 20 31 32 20 69 6e 74 6f |g fld id| 12 into|
|00000d00| 20 6e 65 77 6e 61 6d 65 | 0d 70 75 74 20 74 68 65 | newname|.put the|
|00000d10| 20 6c 65 6e 67 74 68 20 | 6f 66 20 6c 6f 63 61 6c | length |of local|
|00000d20| 6f 6c 64 6e 61 6d 65 20 | 69 6e 74 6f 20 6e 61 6d |oldname |into nam|
|00000d30| 65 6c 65 6e 67 74 68 0d | 72 65 70 65 61 74 20 77 |elength.|repeat w|
|00000d40| 69 74 68 20 78 3d 31 20 | 74 6f 20 6e 61 6d 65 6c |ith x=1 |to namel|
|00000d50| 65 6e 67 74 68 0d 61 64 | 64 20 63 68 61 72 74 6f |ength.ad|d charto|
|00000d60| 6e 75 6d 20 6f 66 20 63 | 68 61 72 20 78 20 6f 66 |num of c|har x of|
|00000d70| 20 6c 6f 63 6f 61 6c 6f | 6c 64 6e 61 6d 65 20 74 | locoalo|ldname t|
|00000d80| 6f 20 61 73 63 69 69 6f | 6c 64 0d 61 64 64 20 63 |o asciio|ld.add c|
|00000d90| 68 61 72 74 6f 6e 75 6d | 20 6f 66 20 63 68 61 72 |hartonum| of char|
|00000da0| 20 78 20 6f 66 20 6e 65 | 77 6e 61 6d 65 20 74 6f | x of ne|wname to|
|00000db0| 20 61 73 63 69 69 6e 65 | 77 0d 65 6e 64 20 72 65 | asciine|w.end re|
|00000dc0| 70 65 61 74 0d 69 66 20 | 6c 6f 63 61 6c 6f 6c 64 |peat.if |localold|
|00000dd0| 6e 61 6d 65 3d 6c 69 6e | 65 20 31 20 6f 66 20 62 |name=lin|e 1 of b|
|00000de0| 67 20 66 69 65 6c 64 20 | 69 64 20 31 32 20 61 6e |g field |id 12 an|
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|000026a0| 6d 20 73 65 71 0d 67 6c | 6f 62 61 6c 20 48 65 6c |m seq.gl|obal Hel|
|000026b0| 70 6f 6c 64 63 64 0d 70 | 75 74 20 22 41 47 43 54 |poldcd.p|ut "AGCT|
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|000026d0| 41 47 43 54 61 67 63 74 | 20 22 26 72 65 74 75 72 |AGCTagct| "&retur|
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|00002970| 72 63 61 72 64 0d 65 6c | 73 65 0d 69 66 20 6c 69 |rcard.el|se.if li|
|00002980| 6e 65 20 36 20 6f 66 20 | 64 52 65 73 75 6c 74 3d |ne 6 of |dResult=|
|00002990| 22 74 72 75 65 22 20 74 | 68 65 6e 0d 73 65 74 20 |"true" t|hen.set |
|000029a0| 63 75 72 73 6f 72 20 74 | 6f 20 77 61 74 63 68 0d |cursor t|o watch.|
|000029b0| 70 75 74 20 74 68 65 20 | 6c 6f 6e 67 20 6e 61 6d |put the |long nam|
|000029c0| 65 20 6f 66 20 74 68 69 | 73 20 63 64 20 69 6e 74 |e of thi|s cd int|
|000029d0| 6f 20 68 65 6c 70 6f 6c | 64 63 64 0d 6c 6f 63 6b |o helpol|dcd.lock|
|000029e0| 74 68 69 6e 67 73 0d 67 | 6f 20 74 6f 20 63 64 20 |things.g|o to cd |
|000029f0| 22 54 68 65 20 4f 6c 69 | 67 6f 20 44 61 74 61 62 |"The Oli|go Datab|
|00002a00| 61 73 65 22 20 6f 66 20 | 73 74 61 63 6b 20 22 44 |ase" of |stack "D|
|00002a10| 61 74 61 6d 69 6e 64 65 | 72 48 65 6c 70 22 0d 69 |ataminde|rHelp".i|
|00002a20| 66 20 74 68 65 20 72 65 | 73 75 6c 74 20 69 73 20 |f the re|sult is |
|00002a30| 6e 6f 74 20 65 6d 70 74 | 79 20 74 68 65 6e 0d 70 |not empt|y then.p|
|00002a40| 6c 61 79 20 68 61 72 70 | 73 69 63 68 6f 72 64 0d |lay harp|sichord.|
|00002a50| 61 6e 73 77 65 72 20 22 | 54 68 65 20 48 65 6c 70 |answer "|The Help|
|00002a60| 20 73 74 61 63 6b 20 69 | 73 20 63 75 72 72 65 6e | stack i|s curren|
|00002a70| 74 6c 79 20 75 6e 61 76 | 61 69 6c 61 62 6c 65 22 |tly unav|ailable"|
|00002a80| 0d 65 78 69 74 20 74 6f | 20 48 79 70 65 72 63 61 |.exit to| Hyperca|
|00002a90| 72 64 0d 65 6c 73 65 0d | 75 6e 6c 6f 63 6b 20 73 |rd.else.|unlock s|
|00002aa0| 63 72 65 65 6e 20 77 69 | 74 68 20 76 69 73 75 61 |creen wi|th visua|
|00002ab0| 6c 20 65 66 66 65 63 74 | 20 69 72 69 73 20 6f 70 |l effect| iris op|
|00002ac0| 65 6e 0d 65 78 69 74 20 | 74 6f 20 48 79 70 65 72 |en.exit |to Hyper|
|00002ad0| 63 61 72 64 0d 65 6e 64 | 20 69 66 0d 65 6c 73 65 |card.end| if.else|
|00002ae0| 20 69 66 20 6c 69 6e 65 | 20 33 20 6f 66 20 64 52 | if line| 3 of dR|
|00002af0| 65 73 75 6c 74 3d 22 74 | 72 75 65 22 20 74 68 65 |esult="t|rue" the|
|00002b00| 6e 20 73 75 67 67 73 20 | 73 65 71 0d 65 6c 73 65 |n suggs |seq.else|
|00002b10| 20 69 66 20 6c 69 6e 65 | 20 34 20 6f 66 20 64 52 | if line| 4 of dR|
|00002b20| 65 73 75 6c 74 3d 22 74 | 72 75 65 22 20 74 68 65 |esult="t|rue" the|
|00002b30| 6e 20 52 79 63 68 6c 69 | 6b 20 73 65 71 0d 65 6c |n Rychli|k seq.el|
|00002b40| 73 65 20 69 66 20 6c 69 | 6e 65 20 35 20 6f 66 20 |se if li|ne 5 of |
|00002b50| 64 52 65 73 75 6c 74 3d | 22 74 72 75 65 22 20 74 |dResult=|"true" t|
|00002b60| 68 65 6e 20 4d 63 43 6f | 6e 61 75 67 68 79 20 73 |hen McCo|naughy s|
|00002b70| 65 71 0d 65 6e 64 20 69 | 66 0d 65 6e 64 20 69 66 |eq.end i|f.end if|
|00002b80| 0d 65 6c 73 65 20 72 79 | 63 68 6c 69 6b 20 73 65 |.else ry|chlik se|
|00002b90| 71 0d 70 75 74 20 74 68 | 65 20 72 65 73 75 6c 74 |q.put th|e result|
|00002ba0| 20 69 6e 74 6f 20 54 6d | 0d 72 65 74 75 72 6e 20 | into Tm|.return |
|00002bb0| 54 6d 0d 65 6e 64 20 54 | 6d 0d 0d 6f 6e 20 4d 63 |Tm.end T|m..on Mc|
|00002bc0| 43 6f 6e 61 75 67 68 79 | 20 73 65 71 2c 4d 0d 69 |Conaughy| seq,M.i|
|00002bd0| 66 20 4d 3c 3e 30 2e 30 | 35 20 74 68 65 6e 0d 70 |f M<>0.0|5 then.p|
|00002be0| 75 74 20 64 69 61 6c 6f | 67 65 72 20 28 22 4d 63 |ut dialo|ger ("Mc|
|00002bf0| 43 6f 6e 61 75 67 68 79 | 20 65 74 2e 20 61 6c 2e |Conaughy| et. al.|
|00002c00| 22 26 72 65 74 75 72 6e | 26 22 6f 6e 20 4d 48 69 |"&return|&"on MHi|
|00002c10| 74 22 c2 0d 2c 22 33 d7 | 30 2e 33 22 29 20 69 6e |t"..,"3.|0.3") in|
|00002c20| 74 6f 20 64 52 65 73 75 | 6c 74 0d 69 66 20 64 52 |to dResu|lt.if dR|
|00002c30| 65 73 75 6c 74 20 63 6f | 6e 74 61 69 6e 73 20 22 |esult co|ntains "|
|00002c40| 63 61 6e 63 65 6c 22 20 | 74 68 65 6e 20 65 78 69 |cancel" |then exi|
|00002c50| 74 20 74 6f 20 48 79 70 | 65 72 63 61 72 64 0d 70 |t to Hyp|ercard.p|
|00002c60| 75 74 20 73 74 72 69 70 | 28 22 4d 6d 22 2c 6c 69 |ut strip|("Mm",li|
|00002c70| 6e 65 20 33 20 6f 66 20 | 64 52 65 73 75 6c 74 29 |ne 3 of |dResult)|
|00002c80| 20 69 6e 74 6f 20 4d 0d | 70 75 74 20 73 74 72 69 | into M.|put stri|
|00002c90| 70 28 22 25 22 2c 6c 69 | 6e 65 20 35 20 6f 66 20 |p("%",li|ne 5 of |
|00002ca0| 64 52 65 73 75 6c 74 29 | 20 69 6e 74 6f 20 50 6d |dResult)| into Pm|
|00002cb0| 0d 70 75 74 20 73 74 72 | 69 70 28 22 25 22 2c 6c |.put str|ip("%",l|
|00002cc0| 69 6e 65 20 34 20 6f 66 | 20 64 52 65 73 75 6c 74 |ine 4 of| dResult|
|00002cd0| 29 20 69 6e 74 6f 20 50 | 66 0d 65 6c 73 65 0d 70 |) into P|f.else.p|
|00002ce0| 75 74 20 65 6d 70 74 79 | 20 69 6e 74 6f 20 50 6d |ut empty| into Pm|
|00002cf0| 0d 70 75 74 20 65 6d 70 | 74 79 20 69 6e 74 6f 20 |.put emp|ty into |
|00002d00| 50 66 0d 65 6e 64 20 69 | 66 0d 70 75 74 20 74 68 |Pf.end i|f.put th|
|00002d10| 65 20 6c 65 6e 67 74 68 | 20 6f 66 20 73 65 71 20 |e length| of seq |
|00002d20| 69 6e 74 6f 20 6c 65 6e | 67 74 68 0d 69 66 20 6c |into len|gth.if l|
|00002d30| 65 6e 67 74 68 20 3c 20 | 31 30 31 20 74 68 65 6e |ength < |101 then|
|00002d40| 20 70 75 74 20 36 37 35 | 20 69 6e 74 6f 20 42 0d | put 675| into B.|
|00002d50| 69 66 20 6c 65 6e 67 74 | 68 20 3e 20 31 30 30 20 |if lengt|h > 100 |
|00002d60| 74 68 65 6e 20 70 75 74 | 20 35 30 30 20 69 6e 74 |then put| 500 int|
|00002d70| 6f 20 42 0d 70 75 74 20 | 74 68 65 20 6c 65 6e 67 |o B.put |the leng|
|00002d80| 74 68 20 6f 66 20 65 78 | 74 72 61 63 74 28 22 47 |th of ex|tract("G|
|00002d90| 43 22 2c 73 65 71 29 20 | 69 6e 74 6f 20 47 43 0d |C",seq) |into GC.|
|00002da0| 69 66 20 47 43 3e 30 20 | 74 68 65 6e 20 70 75 74 |if GC>0 |then put|
|00002db0| 20 47 43 2a 31 30 30 2f | 6c 65 6e 67 74 68 20 69 | GC*100/|length i|
|00002dc0| 6e 74 6f 20 47 43 32 0d | 65 6c 73 65 20 70 75 74 |nto GC2.|else put|
|00002dd0| 20 65 6d 70 74 79 20 69 | 6e 74 6f 20 47 43 32 0d | empty i|nto GC2.|
|00002de0| 70 75 74 20 73 74 72 69 | 70 28 22 4d 22 2c 4d 29 |put stri|p("M",M)|
|00002df0| 20 69 6e 74 6f 20 4d 0d | 70 75 74 20 6c 6e 28 4d | into M.|put ln(M|
|00002e00| 29 2f 32 2e 33 20 69 6e | 74 6f 20 4d 32 0d 73 65 |)/2.3 in|to M2.se|
|00002e10| 74 20 6e 75 6d 62 65 72 | 66 6f 72 6d 61 74 20 74 |t number|format t|
|00002e20| 6f 20 30 2e 30 0d 70 75 | 74 20 28 28 31 36 2e 36 |o 0.0.pu|t ((16.6|
|00002e30| 2a 4d 32 29 2b 28 30 2e | 34 31 2a 47 43 32 29 2b |*M2)+(0.|41*GC2)+|
|00002e40| 38 31 2e 35 29 2d 28 50 | 6d 2b 28 42 2f 6c 65 6e |81.5)-(P|m+(B/len|
|00002e50| 67 74 68 29 2b 28 50 66 | 2a 30 2e 36 35 29 29 20 |gth)+(Pf|*0.65)) |
|00002e60| 69 6e 74 6f 20 54 6d 0d | 70 75 74 20 22 fb 43 20 |into Tm.|put ".C |
|00002e70| 28 22 26 4d 26 22 4d 20 | 4e 61 2b 22 20 61 66 74 |("&M&"M |Na+" aft|
|00002e80| 65 72 20 54 6d 0d 69 66 | 20 50 66 3e 30 20 74 68 |er Tm.if| Pf>0 th|
|00002e90| 65 6e 20 70 75 74 20 22 | 3b 22 26 50 66 26 22 25 |en put "|;"&Pf&"%|
|00002ea0| 20 66 6f 72 6d 61 6d 69 | 64 65 3b 20 22 26 50 6d | formami|de; "&Pm|
|00002eb0| 26 22 25 20 6d 69 73 6d | 61 74 63 68 22 20 61 66 |&"% mism|atch" af|
|00002ec0| 74 65 72 20 54 6d 0d 70 | 75 74 20 22 3b 20 4d 63 |ter Tm.p|ut "; Mc|
|00002ed0| 43 6f 6e 61 75 67 68 79 | 20 65 74 20 61 6c 2e 29 |Conaughy| et al.)|
|00002ee0| 22 20 61 66 74 65 72 20 | 54 6d 0d 72 65 74 75 72 |" after |Tm.retur|
|00002ef0| 6e 20 54 6d 0d 65 6e 64 | 20 4d 63 43 6f 6e 61 75 |n Tm.end| McConau|
|00002f00| 67 68 79 0d 0d 6f 6e 20 | 52 79 63 68 6c 69 6b 20 |ghy..on |Rychlik |
|00002f10| 73 65 71 2c 4d 2c 43 0d | 2d 2d 63 61 6c 63 75 6c |seq,M,C.|--calcul|
|00002f20| 61 74 69 6f 6e 20 6f 66 | 20 54 64 20 62 61 73 65 |ation of| Td base|
|00002f30| 64 20 6f 6e 20 6e 65 61 | 72 65 73 74 20 6e 65 69 |d on nea|rest nei|
|00002f40| 67 68 62 6f 75 72 20 61 | 6e 61 6c 79 73 69 73 c2 |ghbour a|nalysis.|
|00002f50| 0d 2d 2d 28 52 79 63 68 | 6c 69 6b 20 61 6e 64 20 |.--(Rych|lik and |
|00002f60| 52 68 6f 61 64 73 2c 20 | 4e 41 52 20 31 37 28 38 |Rhoads, |NAR 17(8|
|00002f70| 35 34 33 2d 38 35 35 31 | 29 0d 73 65 74 20 63 75 |543-8551|).set cu|
|00002f80| 72 73 6f 72 20 74 6f 20 | 22 44 4e 41 20 31 22 0d |rsor to |"DNA 1".|
|00002f90| 70 75 74 20 65 6d 70 74 | 79 20 69 6e 74 6f 20 73 |put empt|y into s|
|00002fa0| 65 71 32 0d 70 75 74 20 | 65 6d 70 74 79 20 69 6e |eq2.put |empty in|
|00002fb0| 74 6f 20 44 48 0d 70 75 | 74 20 31 30 2e 38 20 69 |to DH.pu|t 10.8 i|
|00002fc0| 6e 74 6f 20 44 53 0d 70 | 75 74 20 22 41 41 2c 54 |nto DS.p|ut "AA,T|
|00002fd0| 54 2c 39 2e 31 2c 32 34 | 22 26 72 65 74 75 72 6e |T,9.1,24|"&return|
|00002fe0| 26 c2 0d 22 41 54 2c 59 | 59 2c 38 2e 36 2c 32 33 |&.."AT,Y|Y,8.6,23|
|00002ff0| 2e 39 22 26 72 65 74 75 | 72 6e 26 c2 0d 22 54 41 |.9"&retu|rn&.."TA|
|00003000| 2c 59 59 2c 36 2e 30 2c | 31 36 2e 39 22 26 72 65 |,YY,6.0,|16.9"&re|
|00003010| 74 75 72 6e 26 c2 0d 22 | 43 41 2c 54 47 2c 35 2e |turn&.."|CA,TG,5.|
|00003020| 38 2c 31 32 2e 39 22 26 | 72 65 74 75 72 6e 26 c2 |8,12.9"&|return&.|
|00003030| 0d 22 47 54 2c 41 43 2c | 36 2e 35 2c 31 37 2e 33 |."GT,AC,|6.5,17.3|
|00003040| 22 26 72 65 74 75 72 6e | 26 c2 0d 22 43 54 2c 41 |"&return|&.."CT,A|
|00003050| 47 2c 37 2e 38 2c 32 30 | 2e 38 22 26 72 65 74 75 |G,7.8,20|.8"&retu|
|00003060| 72 6e 26 c2 0d 22 47 41 | 2c 54 43 2c 35 2e 36 2c |rn&.."GA|,TC,5.6,|
|00003070| 31 33 2e 35 22 26 72 65 | 74 75 72 6e 26 c2 0d 22 |13.5"&re|turn&.."|
|00003080| 43 47 2c 59 59 2c 31 31 | 2e 39 2c 32 37 2e 38 22 |CG,YY,11|.9,27.8"|
|00003090| 26 72 65 74 75 72 6e 26 | c2 0d 22 47 43 2c 59 59 |&return&|.."GC,YY|
|000030a0| 2c 31 31 2e 31 2c 32 36 | 2e 37 22 26 72 65 74 75 |,11.1,26|.7"&retu|
|000030b0| 72 6e 26 c2 0d 22 47 47 | 2c 43 43 2c 31 31 2c 32 |rn&.."GG|,CC,11,2|
|000030c0| 36 2e 36 22 20 69 6e 74 | 6f 20 4e 4e 73 65 74 0d |6.6" int|o NNset.|
|000030d0| 73 65 74 20 6e 75 6d 62 | 65 72 66 6f 72 6d 61 74 |set numb|erformat|
|000030e0| 20 74 6f 20 30 2e 30 30 | 30 30 30 30 30 30 30 30 | to 0.00|00000000|
|000030f0| 30 0d 69 66 20 74 68 65 | 20 74 61 72 67 65 74 20 |0.if the| target |
|00003100| 63 6f 6e 74 61 69 6e 73 | 20 22 50 43 52 22 20 69 |contains| "PCR" i|
|00003110| 73 20 66 61 6c 73 65 20 | 61 6e 64 c2 0d 74 68 65 |s false |and..the|
|00003120| 20 74 61 72 67 65 74 20 | 63 6f 6e 74 61 69 6e 73 | target |contains|
|00003130| 20 22 43 68 6f 6f 73 65 | 22 20 69 73 20 66 61 6c | "Choose|" is fal|
|00003140| 73 65 20 61 6e 64 20 4d | 3c 3e 30 2e 30 35 20 74 |se and M|<>0.05 t|
|00003150| 68 65 6e 0d 70 75 74 20 | 64 69 61 6c 6f 67 65 72 |hen.put |dialoger|
|00003160| 28 22 52 79 63 68 6c 69 | 6b 20 61 6e 64 20 52 68 |("Rychli|k and Rh|
|00003170| 6f 61 64 73 22 26 72 65 | 74 75 72 6e 26 22 6f 6e |oads"&re|turn&"on|
|00003180| 20 52 52 48 69 74 22 c2 | 0d 2c 22 33 d7 74 72 75 | RRHit".|.,"3.tru|
|00003190| 65 22 29 20 69 6e 74 6f | 20 64 52 65 73 75 6c 74 |e") into| dResult|
|000031a0| 0d 69 66 20 64 52 65 73 | 75 6c 74 20 63 6f 6e 74 |.if dRes|ult cont|
|000031b0| 61 69 6e 73 20 22 63 61 | 6e 63 65 6c 22 20 74 68 |ains "ca|ncel" th|
|000031c0| 65 6e 20 65 78 69 74 20 | 74 6f 20 48 79 70 65 72 |en exit |to Hyper|
|000031d0| 63 61 72 64 0d 69 66 20 | 6c 69 6e 65 20 33 20 6f |card.if |line 3 o|
|000031e0| 66 20 64 52 65 73 75 6c | 74 3d 22 74 72 75 65 22 |f dResul|t="true"|
|000031f0| 20 74 68 65 6e 20 70 75 | 74 20 30 2e 30 30 30 30 | then pu|t 0.0000|
|00003200| 30 30 30 30 30 32 35 20 | 69 6e 74 6f 20 43 0d 65 |0000025 |into C.e|
|00003210| 6c 73 65 20 70 75 74 20 | 30 2e 30 30 30 30 30 30 |lse put |0.000000|
|00003220| 30 30 30 31 30 20 69 6e | 74 6f 20 43 0d 70 75 74 |00010 in|to C.put|
|00003230| 20 73 74 72 69 70 28 22 | 4d 6d 22 2c 6c 69 6e 65 | strip("|Mm",line|
|00003240| 20 35 20 6f 66 20 64 52 | 65 73 75 6c 74 29 20 69 | 5 of dR|esult) i|
|00003250| 6e 74 6f 20 4d 0d 65 6c | 73 65 0d 70 75 74 20 30 |nto M.el|se.put 0|
|00003260| 2e 30 30 30 30 30 30 30 | 30 30 32 35 20 69 6e 74 |.0000000|0025 int|
|00003270| 6f 20 43 0d 70 75 74 20 | 30 2e 30 35 20 69 6e 74 |o C.put |0.05 int|
|00003280| 6f 20 4d 0d 65 6e 64 20 | 69 66 0d 70 75 74 20 6c |o M.end |if.put l|
|00003290| 6e 28 4d 29 2f 32 2e 33 | 20 69 6e 74 6f 20 4d 32 |n(M)/2.3| into M2|
|000032a0| 0d 70 75 74 20 74 68 65 | 20 6c 65 6e 67 74 68 20 |.put the| length |
|000032b0| 6f 66 20 65 78 74 72 61 | 63 74 28 22 41 2c 54 22 |of extra|ct("A,T"|
|000032c0| 2c 73 65 71 29 20 69 6e | 74 6f 20 41 54 0d 70 75 |,seq) in|to AT.pu|
|000032d0| 74 20 74 68 65 20 6c 65 | 6e 67 74 68 20 6f 66 20 |t the le|ngth of |
|000032e0| 65 78 74 72 61 63 74 28 | 22 47 2c 43 22 2c 73 65 |extract(|"G,C",se|
|000032f0| 71 29 20 69 6e 74 6f 20 | 47 43 0d 73 65 74 20 63 |q) into |GC.set c|
|00003300| 75 72 73 6f 72 20 74 6f | 20 22 44 4e 41 20 32 22 |ursor to| "DNA 2"|
|00003310| 0d 70 75 74 20 32 20 69 | 6e 74 6f 20 6c 61 73 74 |.put 2 i|nto last|
|00003320| 44 4e 41 0d 2d 2d 67 65 | 6e 65 72 61 74 65 20 63 |DNA.--ge|nerate c|
|00003330| 6f 6d 70 6c 65 6d 65 6e | 74 20 6f 66 20 73 65 71 |omplemen|t of seq|
|00003340| 0d 67 6c 6f 62 61 6c 20 | 72 63 69 6e 2c 72 63 6f |.global |rcin,rco|
|00003350| 75 74 2c 72 6e 61 0d 70 | 75 74 20 73 65 71 20 69 |ut,rna.p|ut seq i|
|00003360| 6e 74 6f 20 72 63 69 6e | 0d 70 75 74 20 22 44 4e |nto rcin|.put "DN|
|00003370| 41 22 20 69 6e 74 6f 20 | 6e 75 63 74 79 70 65 0d |A" into |nuctype.|
|00003380| 70 75 74 20 72 65 76 65 | 72 73 65 53 74 72 69 6e |put reve|rseStrin|
|00003390| 67 28 72 63 69 6e 29 20 | 69 6e 74 6f 20 72 63 6f |g(rcin) |into rco|
|000033a0| 75 74 0d 70 75 74 20 22 | 54 41 41 43 47 22 20 69 |ut.put "|TAACG" i|
|000033b0| 6e 74 6f 20 74 6f 53 74 | 72 0d 70 75 74 20 74 72 |nto toSt|r.put tr|
|000033c0| 61 6e 73 6c 69 74 28 22 | 61 74 75 67 63 41 54 55 |anslit("|atugcATU|
|000033d0| 47 43 22 2c 20 74 6f 53 | 74 72 20 26 20 74 6f 53 |GC", toS|tr & toS|
|000033e0| 74 72 2c 20 72 63 6f 75 | 74 29 20 69 6e 74 6f 20 |tr, rcou|t) into |
|000033f0| 72 63 6f 75 74 0d 70 75 | 74 20 74 72 61 6e 73 6c |rcout.pu|t transl|
|00003400| 69 74 28 22 c2 41 54 55 | 47 43 2e 6e 22 2c 20 22 |it(".ATU|GC.n", "|
|00003410| 20 22 2c 20 72 63 6f 75 | 74 29 20 69 6e 74 6f 20 | ", rcou|t) into |
|00003420| 72 63 6f 75 74 0d 70 75 | 74 20 72 63 6f 75 74 20 |rcout.pu|t rcout |
|00003430| 69 6e 74 6f 20 73 65 71 | 32 0d 0d 69 66 20 72 6f |into seq|2..if ro|
|00003440| 75 6e 64 28 74 68 65 20 | 6c 65 6e 67 74 68 20 6f |und(the |length o|
|00003450| 66 20 73 65 71 32 2f 32 | 29 3d 74 68 65 20 6c 65 |f seq2/2|)=the le|
|00003460| 6e 67 74 68 20 6f 66 20 | 73 65 71 32 2f 32 20 74 |ngth of |seq2/2 t|
|00003470| 68 65 6e 0d 64 65 6c 65 | 74 65 20 63 68 61 72 20 |hen.dele|te char |
|00003480| 31 20 6f 66 20 73 65 71 | 32 0d 64 65 6c 65 74 65 |1 of seq|2.delete|
|00003490| 20 6c 61 73 74 20 63 68 | 61 72 20 6f 66 20 73 65 | last ch|ar of se|
|000034a0| 71 32 0d 65 6c 73 65 20 | 64 65 6c 65 74 65 20 6c |q2.else |delete l|
|000034b0| 61 73 74 20 63 68 61 72 | 20 6f 66 20 73 65 71 0d |ast char| of seq.|
|000034c0| 0d 70 75 74 20 73 65 71 | 26 22 2c 22 26 73 65 71 |.put seq|&","&seq|
|000034d0| 32 20 69 6e 74 6f 20 73 | 65 71 73 65 74 0d 73 65 |2 into s|eqset.se|
|000034e0| 74 20 6e 75 6d 62 65 72 | 66 6f 72 6d 61 74 20 74 |t number|format t|
|000034f0| 6f 20 30 0d 72 65 70 65 | 61 74 20 77 69 74 68 20 |o 0.repe|at with |
|00003500| 78 3d 31 20 74 6f 20 74 | 68 65 20 6e 75 6d 62 65 |x=1 to t|he numbe|
|00003510| 72 20 6f 66 20 69 74 65 | 6d 73 20 69 6e 20 73 65 |r of ite|ms in se|
|00003520| 71 73 65 74 0d 70 75 74 | 20 69 74 65 6d 20 78 20 |qset.put| item x |
|00003530| 6f 66 20 73 65 71 73 65 | 74 20 69 6e 74 6f 20 73 |of seqse|t into s|
|00003540| 65 71 74 65 73 74 0d 70 | 75 74 20 74 68 65 20 6c |eqtest.p|ut the l|
|00003550| 65 6e 67 74 68 20 6f 66 | 20 73 65 71 74 65 73 74 |ength of| seqtest|
|00003560| 20 69 6e 74 6f 20 6c 65 | 6e 67 74 68 0d 72 65 70 | into le|ngth.rep|
|00003570| 65 61 74 20 77 69 74 68 | 20 78 3d 31 20 74 6f 20 |eat with| x=1 to |
|00003580| 72 6f 75 6e 64 28 6c 65 | 6e 67 74 68 2f 32 29 2b |round(le|ngth/2)+|
|00003590| 32 0d 69 66 20 6c 61 73 | 74 44 4e 41 3d 33 20 74 |2.if las|tDNA=3 t|
|000035a0| 68 65 6e 20 70 75 74 20 | 31 20 69 6e 74 6f 20 6c |hen put |1 into l|
|000035b0| 61 73 74 44 4e 41 0d 73 | 65 74 20 63 75 72 73 6f |astDNA.s|et curso|
|000035c0| 72 20 74 6f 20 22 44 4e | 41 22 26 26 6c 61 73 74 |r to "DN|A"&&last|
|000035d0| 44 4e 41 0d 61 64 64 20 | 31 20 74 6f 20 6c 61 73 |DNA.add |1 to las|
|000035e0| 74 44 4e 41 0d 70 75 74 | 20 63 68 61 72 20 31 20 |tDNA.put| char 1 |
|000035f0| 74 6f 20 32 20 6f 66 20 | 73 65 71 74 65 73 74 20 |to 2 of |seqtest |
|00003600| 69 6e 74 6f 20 68 6f 6c | 64 65 72 0d 72 65 70 65 |into hol|der.repe|
|00003610| 61 74 20 77 69 74 68 20 | 78 3d 31 20 74 6f 20 74 |at with |x=1 to t|
|00003620| 68 65 20 6e 75 6d 62 65 | 72 20 6f 66 20 6c 69 6e |he numbe|r of lin|
|00003630| 65 73 20 69 6e 20 4e 4e | 73 65 74 0d 69 66 20 68 |es in NN|set.if h|
|00003640| 6f 6c 64 65 72 3d 69 74 | 65 6d 20 31 20 6f 66 20 |older=it|em 1 of |
|00003650| 6c 69 6e 65 20 78 20 6f | 66 20 4e 4e 73 65 74 20 |line x o|f NNset |
|00003660| 6f 72 c2 0d 68 6f 6c 64 | 65 72 3d 69 74 65 6d 20 |or..hold|er=item |
|00003670| 32 20 6f 66 20 6c 69 6e | 65 20 78 20 6f 66 20 4e |2 of lin|e x of N|
|00003680| 4e 73 65 74 20 74 68 65 | 6e 0d 61 64 64 20 69 74 |Nset the|n.add it|
|00003690| 65 6d 20 33 20 6f 66 20 | 6c 69 6e 65 20 78 20 6f |em 3 of |line x o|
|000036a0| 66 20 4e 4e 73 65 74 20 | 74 6f 20 44 48 0d 61 64 |f NNset |to DH.ad|
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|000057b0| 2d 2d 2d 2d 2d 2d 2d 2d | 2d 2d 2d 2d 2d 2d 0d 2d |--------|------.-|
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|000057f0| 2d 2d 2d 2d 2d 2d 2d 2d | 2d 2d 2d 2d 2d 2d 2d 2d |--------|--------|
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|00005a90| 20 43 52 0d 0d 2d 2d 20 | 2d 2d 2d 2d 2d 2d 2d 2d | CR..-- |--------|
|00005aa0| 2d 2d 2d 2d 2d 2d 2d 2d | 2d 2d 2d 2d 2d 2d 2d 2d |--------|--------|
|00005ab0| 2d 2d 2d 2d 2d 2d 2d 0d | 2d 2d 20 49 74 65 6d 73 |-------.|-- Items|
|00005ac0| 20 69 6e 20 44 69 61 6c | 6f 67 3a 20 22 61 64 64 | in Dial|og: "add|
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|00005ae0| 2d 2d 2d 2d 2d 2d 2d 2d | 2d 2d 2d 2d 2d 2d 2d 2d |--------|--------|
|00005af0| 2d 2d 2d 2d 2d 2d 2d 2d | 2d 0d 2d 2d 20 31 20 d7 |--------|-.-- 1 .|
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|00005c00| 2d 2d 2d 2d 2d 2d 2d 2d | 2d 2d 2d 2d 2d 2d 2d 2d |--------|--------|
|00005c10| 2d 2d 2d 2d 2d 2d 2d 2d | 2d 0d 0d 0d 70 75 74 20 |--------|-...put |
|00005c20| 44 69 61 6c 6f 67 65 72 | 28 22 61 64 64 4d 6f 74 |Dialoger|("addMot|
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|00005f10| 73 74 72 69 70 63 68 61 | 72 73 0d 70 75 74 20 69 |stripcha|rs.put i|
|00005f20| 74 65 6d 20 32 20 6f 66 | 20 6c 69 6e 65 20 74 6f |tem 2 of| line to|
|00005f30| 41 64 64 20 6f 66 20 63 | 64 20 66 6c 64 20 22 6d |Add of c|d fld "m|
|00005f40| 6f 74 69 66 73 22 20 69 | 6e 74 6f 20 61 64 64 6d |otifs" i|nto addm|
|00005f50| 6f 74 69 66 0d 69 66 20 | 69 74 65 6d 20 33 20 6f |otif.if |item 3 o|
|00005f60| 66 20 6c 69 6e 65 20 74 | 6f 41 64 64 20 6f 66 20 |f line t|oAdd of |
|00005f70| 63 64 20 66 6c 64 20 22 | 6d 6f 74 69 66 73 22 20 |cd fld "|motifs" |
|00005f80| 69 73 20 6e 6f 74 20 65 | 6d 70 74 79 20 74 68 65 |is not e|mpty the|
|00005f90| 6e 0d 61 6e 73 77 65 72 | 20 69 74 65 6d 20 33 20 |n.answer| item 3 |
|00005fa0| 6f 66 20 6c 69 6e 65 20 | 74 6f 41 64 64 20 6f 66 |of line |toAdd of|
|00005fb0| 20 63 64 20 66 6c 64 20 | 22 6d 6f 74 69 66 73 22 | cd fld |"motifs"|
|00005fc0| 20 77 69 74 68 20 22 50 | 72 6f 63 65 65 64 22 20 | with "P|roceed" |
|00005fd0| 6f 72 20 22 43 61 6e 63 | 65 6c 22 0d 69 66 20 69 |or "Canc|el".if i|
|00005fe0| 74 20 69 73 20 22 43 61 | 6e 63 65 6c 22 20 74 68 |t is "Ca|ncel" th|
|00005ff0| 65 6e 20 65 78 69 74 20 | 61 64 64 6d 6f 74 69 66 |en exit |addmotif|
|00006000| 0d 65 6e 64 20 69 66 0d | 69 66 20 73 74 72 69 70 |.end if.|if strip|
|00006010| 28 73 74 72 69 70 63 68 | 61 72 73 2c 63 64 20 66 |(stripch|ars,cd f|
|00006020| 6c 64 20 33 29 20 69 73 | 20 65 6d 70 74 79 20 74 |ld 3) is| empty t|
|00006030| 68 65 6e 20 70 75 74 20 | 22 36 d7 69 6e 61 63 74 |hen put |"6.inact|
|00006040| 69 76 61 74 65 22 20 69 | 6e 74 6f 20 68 6f 6c 64 |ivate" i|nto hold|
|00006050| 65 72 0d 65 6c 73 65 20 | 70 75 74 20 22 36 d7 74 |er.else |put "6.t|
|00006060| 72 75 65 22 20 69 6e 74 | 6f 20 68 6f 6c 64 65 72 |rue" int|o holder|
|00006070| 0d 70 75 74 20 64 69 61 | 6c 6f 67 65 72 28 22 41 |.put dia|loger("A|
|00006080| 64 64 6d 6f 74 69 66 32 | 22 26 72 65 74 75 72 6e |ddmotif2|"&return|
|00006090| 26 22 33 d7 74 72 75 65 | 22 2c 68 6f 6c 64 65 72 |&"3.true|",holder|
|000060a0| 29 20 69 6e 74 6f 20 64 | 52 65 73 75 6c 74 0d 69 |) into d|Result.i|
|000060b0| 66 20 64 52 65 73 75 6c | 74 20 63 6f 6e 74 61 69 |f dResul|t contai|
|000060c0| 6e 73 20 22 63 61 6e 63 | 65 6c 22 20 74 68 65 6e |ns "canc|el" then|
|000060d0| 20 65 78 69 74 20 61 64 | 64 6d 6f 74 69 66 0d 69 | exit ad|dmotif.i|
|000060e0| 66 20 6c 69 6e 65 20 36 | 20 6f 66 20 64 52 65 73 |f line 6| of dRes|
|000060f0| 75 6c 74 3d 22 74 72 75 | 65 22 20 74 68 65 6e 0d |ult="tru|e" then.|
|00006100| 70 75 74 20 73 74 72 69 | 70 28 73 74 72 69 70 63 |put stri|p(stripc|
|00006110| 68 61 72 73 2c 63 64 20 | 66 6c 64 20 33 29 20 69 |hars,cd |fld 3) i|
|00006120| 6e 74 6f 20 63 64 66 6c | 64 33 0d 70 75 74 20 74 |nto cdfl|d3.put t|
|00006130| 68 65 20 6c 65 6e 67 74 | 68 20 6f 66 20 63 64 66 |he lengt|h of cdf|
|00006140| 6c 64 33 20 69 6e 74 6f | 20 6c 65 6e 67 74 68 0d |ld3 into| length.|
|00006150| 70 75 74 20 63 68 61 72 | 20 6c 65 6e 67 74 68 2d |put char| length-|
|00006160| 35 30 20 74 6f 20 6c 65 | 6e 67 74 68 20 6f 66 20 |50 to le|ngth of |
|00006170| 63 64 66 6c 64 33 26 63 | 64 20 66 6c 64 20 33 20 |cdfld3&c|d fld 3 |
|00006180| 69 6e 74 6f 20 63 64 66 | 6c 64 63 69 72 63 0d 69 |into cdf|ldcirc.i|
|00006190| 66 20 61 64 64 6d 6f 74 | 69 66 20 69 73 20 69 6e |f addmot|if is in|
|000061a0| 20 63 64 66 6c 64 33 20 | 6f 72 20 61 64 64 6d 6f | cdfld3 |or addmo|
|000061b0| 74 69 66 20 69 73 20 69 | 6e 20 63 64 66 6c 64 63 |tif is i|n cdfldc|
|000061c0| 69 72 63 20 74 68 65 6e | 20 70 75 74 20 79 65 73 |irc then| put yes|
|000061d0| 20 69 6e 74 6f 20 73 69 | 74 65 73 0d 2d 2d 63 6f | into si|tes.--co|
|000061e0| 6d 70 6c 65 6d 65 6e 74 | 0d 67 6c 6f 62 61 6c 20 |mplement|.global |
|000061f0| 72 63 69 6e 2c 72 63 6f | 75 74 2c 72 6e 61 0d 70 |rcin,rco|ut,rna.p|
|00006200| 75 74 20 61 64 64 6d 6f | 74 69 66 20 69 6e 74 6f |ut addmo|tif into|
|00006210| 20 72 63 69 6e 0d 69 66 | 20 72 63 69 6e 20 63 6f | rcin.if| rcin co|
|00006220| 6e 74 61 69 6e 73 20 22 | 74 22 20 74 68 65 6e 0d |ntains "|t" then.|
|00006230| 70 75 74 20 22 44 4e 41 | 22 20 69 6e 74 6f 20 6e |put "DNA|" into n|
|00006240| 75 63 74 79 70 65 0d 65 | 6e 64 20 69 66 0d 70 75 |uctype.e|nd if.pu|
|00006250| 74 20 72 65 76 65 72 73 | 65 53 74 72 69 6e 67 28 |t revers|eString(|
|00006260| 72 63 69 6e 29 20 69 6e | 74 6f 20 72 63 6f 75 74 |rcin) in|to rcout|
|00006270| 0d 69 66 20 72 6e 61 20 | 69 73 20 22 66 61 6c 73 |.if rna |is "fals|
|00006280| 65 22 20 74 68 65 6e 0d | 2d 2d 69 66 20 28 6e 75 |e" then.|--if (nu|
|00006290| 63 74 79 70 65 20 69 73 | 20 22 44 4e 41 22 29 20 |ctype is| "DNA") |
|000062a0| 61 6e 64 20 28 72 6e 61 | 20 69 73 20 22 66 61 6c |and (rna| is "fal|
|000062b0| 73 65 22 29 20 74 68 65 | 6e 0d 70 75 74 20 22 54 |se") the|n.put "T|
|000062c0| 41 41 43 47 22 20 69 6e | 74 6f 20 74 6f 53 74 72 |AACG" in|to toStr|
|000062d0| 0d 65 6c 73 65 0d 70 75 | 74 20 22 55 41 41 43 47 |.else.pu|t "UAACG|
|000062e0| 22 20 61 66 74 65 72 20 | 74 6f 53 74 72 0d 65 6e |" after |toStr.en|
|000062f0| 64 20 69 66 0d 70 75 74 | 20 74 72 61 6e 73 6c 69 |d if.put| transli|
|00006300| 74 28 22 61 74 75 67 63 | 41 54 55 47 43 22 2c 20 |t("atugc|ATUGC", |
|00006310| 74 6f 53 74 72 20 26 20 | 74 6f 53 74 72 2c 20 72 |toStr & |toStr, r|
|00006320| 63 6f 75 74 29 20 69 6e | 74 6f 20 72 63 6f 75 74 |cout) in|to rcout|
|00006330| 0d 70 75 74 20 74 72 61 | 6e 73 6c 69 74 28 22 c2 |.put tra|nslit(".|
|00006340| 41 54 55 47 43 2e 4e 2a | 22 2c 20 22 20 22 2c 20 |ATUGC.N*|", " ", |
|00006350| 72 63 6f 75 74 29 20 69 | 6e 74 6f 20 72 63 6f 75 |rcout) i|nto rcou|
|00006360| 74 0d 70 75 74 20 72 63 | 6f 75 74 20 69 6e 74 6f |t.put rc|out into|
|00006370| 20 63 6f 6d 70 0d 69 66 | 20 63 6f 6d 70 20 69 73 | comp.if| comp is|
|00006380| 20 69 6e 20 63 64 66 6c | 64 33 20 6f 72 20 63 6f | in cdfl|d3 or co|
|00006390| 6d 70 20 69 73 20 69 6e | 20 63 64 66 6c 64 63 69 |mp is in| cdfldci|
|000063a0| 72 63 20 6f 72 20 73 69 | 74 65 73 20 63 6f 6e 74 |rc or si|tes cont|
|000063b0| 61 69 6e 73 20 22 59 65 | 73 22 20 74 68 65 6e 0d |ains "Ye|s" then.|
|000063c0| 70 6c 61 79 20 68 61 72 | 70 73 69 63 68 6f 72 64 |play har|psichord|
|000063d0| 0d 61 6e 73 77 65 72 20 | 22 54 68 65 20 74 61 72 |.answer |"The tar|
|000063e0| 67 65 74 20 73 69 74 65 | 20 63 6f 6e 74 61 69 6e |get site| contain|
|000063f0| 73 20 74 68 65 20 73 69 | 74 65 20 79 6f 75 20 68 |s the si|te you h|
+--------+-------------------------+-------------------------+--------+--------+
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